last update : january 2015

Public data retrieved in 2014



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AT3G08940 protein group

See also TAIR PPDB AtProteome SUBA POGs Aramemnon
Protein AT3G08940
Master Protein AT3G08940.2
Description (curated) LHCB4.2 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding
Calculated MW (PPDB) 31.19
Calculated PI (PPDB) 5.85
Length 287
Curated Annotation
Description (curated) LHCB4.2 (LHCII-4.2, CP29.2) photosystem II light harvesting complex gene 4,2, chlorophyll A-B binding protein CP29.2, chloroplast precursor /
Function (curated) PS LHCII
Localization (curated) Ch/Th
Localization (validated) Yes
References
Curated Protein Name
Publication (PPDB)
Peptides
Sequence Monoisotopic mass Retention Time Score Observed MS/MS count
PAEYLQFDLDSLDQNLAK 2,079.01601 0.53 86.7 2
NAELDSEKR 1,060.51486 0.13 70.6 131
NLYGEVIGTR 1,120.58762 0.36 81.6 32
FRECELIHGR 1,306.60876 0.28 88 79
NAELDSEK 904.41376 0.13 40.5 9
GPLNNWATHLSDPLHTTIIDTFSSS 2,723.31909 0.57 33.7 2
FGFGTKK 783.42787 0.21 30.2 1
TVISDRPLWFPGAK 1,585.86162 0.41 62.1 6
STPFQPYSEVFGLQR 1,754.86273 0.48 104.8 55
NLYGEVIGTRTEAVDPK 1,860.95807 0.37 51.6 6
AQLQLAEIK 1,012.59166 0.33 69.1 40
TEAVDPK 758.38101 0.11 37.9 6
KAQLQLAEIK 1,140.68662 0.27 57.5 7
LAMVGFLGFAVQAAATGK 1,766.93883 0.53 144.9 8
LAMVGFLGFAVQAAATGK 1,782.93375 0.55 154.2 14
Reference of the experiment Reference date Log Fold Change pValue Curated Protein Complex Classes Differentially distributed proteins high or medium
thylakoïd_sub_compartments 2013-10-01 00:00:00 CEST -1.66427 0 BBY_high
Reference of the experiment Reference date score % of enveloppe score % of thylakoïd score % of stroma Total spectral count Localization Score
at_chloro_v1 2010 06 2.74 97.26 0 380 THY
Reference of the experiment Reference date Sample CAM Binding Protein
cam_bp 2013-01-01 00:00:00 CET Arabidopsis_membranes;