last update : january 2015

Public data retrieved in 2014



Home

AT5G60600 protein group

See also TAIR PPDB AtProteome SUBA POGs Aramemnon
Protein AT5G60600
Master Protein AT5G60600.1
Description (curated) GcpE (CHLOROPLAST BIOGENESIS 4); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Calculated MW (PPDB) 82.25
Calculated PI (PPDB) 6.01
Length 741
Curated Annotation
Description (curated) ISPG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Function (curated) metabolism isoprenoids
Localization (curated) Ch/S
Localization (validated) Yes
References
Curated Protein Name
Publication (PPDB)
Peptides
Sequence Monoisotopic mass Retention Time Score Observed MS/MS count
DITGTVDEVMR 1,266.57616 0.34 85.5 7
ASNPVIMVQAYR 1,379.68669 0.36 54.8 2
IADKGADIVR 1,056.59271 0.19 68.7 15
SAIGIGTLLQDGLGDTIR 1,798.97882 0.55 126.7 9
TGDLPVQK 856.46541 0.19 42.7 1
DGSVLMSISLDQLK 1,536.77049 0.48 106.3 7
VSLTEPPEEEIDPCRR 1,916.87852 0.35 82.2 5
GMVESAFEFAR 1,274.56007 0.39 85.8 11
TVMVGNVALGSEHPIR 1,710.87224 0.32 115.1 5
IQTMTTSDTK 1,156.52818 0.13 52.8 7
GIAMTEATDALIGLIK 1,615.88544 0.60 73.2 1
RTGDLPVQK 1,012.56651 0.17 28.5 1
ELPPVDDQVAR 1,237.63023 0.28 53.9 10
VNPGNFADRR 1,144.57370 0.22 25.7 2
DLATVDSILLR 1,214.68703 0.50 77.7 10
VNPGNFADR 988.47260 0.24 36.8 1
NIDATMILHDVPFTEDK 1,989.93533 0.47 56.9 1
IQTMTTSDTKDITGTVDEVMR 2,405.09378 0.33 88 5
NTSFNLLQGCR 1,299.58771 0.41 72 1
TLFDLQEISAEIR 1,533.80383 0.54 81.8 4
IGTNHGSLSDR 1,155.56322 0.16 68.7 18
LQQGVAPFEEK 1,244.64004 0.30 50.3 9
LVVGMPFKDLATVDSILLR 2,118.17580 0.55 52.4 3
GDEPYEELEILK 1,433.69254 0.45 57.4 1
EGEEVDYR 995.41956 0.21 27 2
GIAMTEATDALIGLIK 1,647.87528 0.52 135.4 9
VAECFDKIR 1,127.52806 0.30 58.4 7
IMSYYGDSPR 1,219.51791 0.26 42.4 4
Reference of the experiment Reference date score % of enveloppe score % of thylakoïd score % of stroma Total spectral count Localization Score
at_chloro_v1 2010 06 0 0 100 151 STR
Reference of the experiment Reference date Log Fold Change pValue Curated Protein Complex Classes Differentially distributed proteins high or medium
thylakoïd_sub_compartments 2013-10-01 00:00:00 CEST 0 1 -