last update : january 2015

Public data retrieved in 2014



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AT5G08280 protein group

See also TAIR PPDB AtProteome SUBA POGs Aramemnon
Protein AT5G08280
Master Protein AT5G08280.1
Description (curated) HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane synthase
Calculated MW (PPDB) 41.04
Calculated PI (PPDB) 8.75
Length 382
Curated Annotation
Description (curated) HEM3 (HEMC) porphobilinogen deaminase (hydroxymethylbilane synthase), chloroplast precursor (EC 2.5.1.61) /
Function (curated) metabolism vitamin and pigment
Localization (curated) Ch/S
Localization (validated) Yes
References
Curated Protein Name
Publication (PPDB)
Peptides
Sequence Monoisotopic mass Retention Time Score Observed MS/MS count
KGPYVYEDMVK 1,359.63800 0.25 64.1 18
TDDDKMATYLASLNHEETR 2,224.99062 0.30 66.4 2
MATYLASLNHEETR 1,634.77222 0.33 93.7 6
GSPLALAQAYETR 1,375.70953 0.40 95.6 33
ILSQPLADIGGK 1,210.69209 0.36 86.3 75
VLETSRK 831.48138 0.08 31.2 1
LQGGKVQATLLALAGLKR 1,836.13081 0.49 56.7 2
DAGQELLSR 987.49849 0.27 71.8 31
TPIAGYASK 906.48105 0.22 63.1 8
KGPYVYEDMVK 1,343.64308 0.25 46.3 11
TTGDKILSQPLADIGGK 1,712.93082 0.36 72.9 3
TDDDKMATYLASLNHEETR 2,240.98554 0.31 126 6
KGPYVYEDMVK 1,327.64816 0.31 66.5 5
MATYLASLNHEETR 1,666.76205 0.30 107.6 3
LAISCER 838.38544 0.25 38.3 2
GPYVYEDMVK 1,215.54813 0.28 39.6 1
TILPCNLPR 1,073.55391 0.39 55.9 4
GLVASPDGTK 943.49742 0.20 43.3 11
KSQILHK 852.51811 0.08 41.7 2
GLVASPDGTKVLETSR 1,628.87329 0.30 77.7 3
DEEGNCIFR 1,129.43456 0.38 47.7 5
GPYVYEDMVK 1,231.54304 0.30 48.1 3
AFLETLDGSCR 1,258.54993 0.43 77.2 12
VQATLLALAGLKR 1,352.85031 0.42 90.2 15
MATYLASLNHEETR 1,650.76714 0.30 98.7 5
EDVRDAFICLTAATLAELPAGSVVGTASLR 3,093.56512 0.65 96.1 1
EIDEALINGHIDIAVHSMK 2,104.06222 0.44 58.3 1
VQATLLALAGLK 1,196.74921 0.49 104.9 43
DVPTYLPEK 1,060.54405 0.31 45.9 5
MGKDAGQELLSR 1,335.64522 0.23 52.3 5
YPALHVEENFR 1,373.67274 0.34 56.4 8
Reference of the experiment Reference date score % of enveloppe score % of thylakoïd score % of stroma Total spectral count Localization Score
at_chloro_v1 2010 06 4.47 0 95.53 312 STR
Reference of the experiment Reference date Sample CAM Binding Protein
cam_bp 2013-01-01 00:00:00 CET Arabidopsis_stroma;
Reference of the experiment Reference date Log Fold Change pValue Curated Protein Complex Classes Differentially distributed proteins high or medium
thylakoïd_sub_compartments 2013-10-01 00:00:00 CEST 0 1 -